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uncertainty demo notebook.
Description of Changes
This adds a Jupyter notebook (and example mechanism) for running UQ on a surface mechanism. There s also a small bugfix
for the uncertainty tool where it ...
Adds basic utilities to load and save FluidFlower snapshots in prescribed format, and a notebook for interaction with
data stored in the shared folder.
@AlrauneZ Great work on the notebooks! I have fixed the linting issues and merged your work with mine. If you pull from
this branch you should get the updated version without any issues. Also, example_mibitrans_anatrans now contains the
diversity model comparison figure we discussed last Monday.
documentation
Description
This PR contains DPO and ORPO example notebooks. These notebooks will also serve as integration tests for DPO.
Tests
Ran the notebooks manually.
Checklist
Before submitting this PR ...
Integrate nbsearch (Solr-backed notebook search) into the Mynerva action protocol so the LLM can discover and read
notebooks across the server, not just the one currently open.
Three new query ...
enhancement
Add Colab notebook with full evaluation workflow:
- Covers model training (Phase 1 classifier and localizer)
- Includes demo runs and codebase inspection
- Implements Evaluation Part 1: Google ...