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Problem
Two issues in the virtualized reads table (src/views/components/):
1. Row defined inside ReadsInstance (squiggy-reads-instance.tsx:231-263). The React.memo(...) Row is declared in the
component ...
bug
Priority: Medium
ui
jayhesselberth
Hi, and thanks for OpenStudy. I ran a static RLS analyzer (pgrls) over migrations/ and spotted two small hardening
items:
1. Perf: the *_user_isolation policies (~16, on courses / deliverables / app_settings ...
dmitrymaranik
Problem
Backend read lookups scan the whole BAM linearly to find a single read by name — O(n) per read, O(n·m) when plotting m
reads:
- squiggy/alignment.py:64-67 (extract_alignment_from_bam) — bam.fetch(until_eof=True) ...
bug
Priority: Medium
Problem
There are three competing error-reporting paths across the command layer, used inconsistently. A solid
src/utils/error-handler.ts (handleError, safeExecute*, ErrorContext, typed SquiggyError subclasses) ...
Priority: Medium
refactor
Can you make a Docker version of the wafcontrol tool? Most, if not all other elements to be installed on top of
Debian/Ubuntu exist as Docker containers, and containers can be installed on top of any Linux ...
HQuest
Problem
SquiggyKernelManager has several concurrency / lifecycle gaps (src/backend/squiggy-kernel-manager.ts):
1. No in-flight guard on start() (~line 97). The if (this.session) return guard checks ...
bug
Priority: Medium
Problem
Five plot-generation methods in src/backend/squiggy-runtime-api.ts call executeSilent() directly without the
_squiggy_plot_error capture pattern used by generatePlot() / generateMultiSamplePlot(): ...
bug
Priority: High
Developers evaluating StellarKit have no runnable examples to learn from. Create an examples/ folder at the repo root
with three self-contained Node.js scripts that demonstrate real Stellar workflows built ...
documentation
dx
stellar
Sulex45
Problem
calculate_aggregate_signal() maps signal samples to reference coordinates with a naive ref_pos += 1 on every move == 1,
unlike its sibling stats functions (calculate_base_pileup, calculate_quality_by_position) ...
bug
Priority: High
The hover is broken once again, you just un did the earlier work. I need the hover area to be the entire card not just
part of it. And dont break it again, reference PR #217
agent
bug
stephenandrews
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Learn how you can use GitHub Issues to plan and track your work.
Save views for sprints, backlogs, teams, or releases. Rank, sort, and filter issues to suit the occasion. The possibilities are endless.Learn more about GitHub IssuesProTip! Restrict your search to the title by using the in:title qualifier.