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Filter:Issues5.8M (5.8M)

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iossifovlab/gain

annotate_tabular: TabixFile reads bgz input as ASCII, crashes on non-ASCII (UTF-8) annotation columns

Symptom annotate_tabular (and --reannotate) crashes with UnicodeDecodeError from pysam when the bgzipped/tabix-indexed input file contains non-ASCII characters: File pysam/libctabix.pyx , line 677, ...

bug

in-progress

needs-triage

P2

• lchorbadjiev
·
• 1
·
• Opened 
  34 minutes ago
·
• #120

MockaSort-Studio/hall-of-automata

fix(detect): filter PR-thread comments and non-CHANGES_REQUESTED reviews

!-- Hall dispatch by Old Major (Session Mode) -- Working repository All work for this task — branch, commits, and the final PR — must be created in MockaSort-Studio/hall-of-automata. Do not create branches ...

hall:snowball

• mksetaro
·
• 2
·
• Opened 
  35 minutes ago
·
• #111

gchq/sleeper

QueryLambdaClient closes System.in

Description / Background The script scripts/utility/lambdaQuery.sh throws an exception because System.in has been closed. Steps to reproduce 1. Deploy a Sleeper instance with the query stack 2. Run ...

bug

• patchwork01
·
• Opened 
  35 minutes ago
·
• #7410

pelazas/renderpr

Harden interactive screenshot actions

Goal Allow RenderPR to click real reveal controls for hidden UI such as modals, dropdowns, drawers, toggles, and accordions, while preventing random LLM-generated clicks on table data, badges, names, ...

• pelazas
·
• Opened 
  36 minutes ago
·
• #26

MockaSort-Studio/hall-of-automata

chore(invoke): remove post-mortem steps and max-turns dead inputs

!-- Hall dispatch by Old Major (Session Mode) -- Working repository All work for this task — branch, commits, and the final PR — must be created in MockaSort-Studio/hall-of-automata. Do not create branches ...

hall:snowball

• mksetaro
·
• 2
·
• Opened 
  36 minutes ago
·
• #110

MockaSort-Studio/hall-of-automata

fix(onboarding): complete workflow_call guard fix and resolve Old Major routing conflict

!-- Hall dispatch by Old Major (Session Mode) -- Working repository All work for this task — branch, commits, and the final PR — must be created in MockaSort-Studio/hall-of-automata. Do not create branches ...

hall:snowball

• mksetaro
·
• 2
·
• Opened 
  37 minutes ago
·
• #109

infinispan/infinispan

Explicitly declare ADMIN permissions on all endpoints

Description The LoggingResource and TasksResource REST endpoints don t explicitly declare required permissions. Implementation ideas No response

• tristantarrant
·
• Opened 
  37 minutes ago
·
• #17634

PrefectHQ/prefect

Concurrent subflow calls adopt the WRONG subflow's persisted result on parent flow retry (positional dynamic_key race)

Bug summary When subflows are invoked concurrently (the common task.submit() wrapper pattern used because Prefect 3 has no flow.map()), the virtual task run that tracks each subflow ge ts its dynamic_key ...

bug

• mlopseng
·
• Opened 
  38 minutes ago
·
• #22259

rajeshgoli/session-manager

Rust MVP: mobile terminal emergency disable

Spec: specs/762_rust_migration_and_ruggedization.md and Stage 2/3/4/5 mobile artifacts. Implement the retained native mobile terminal emergency kill switch in Rust now that attach tickets, WebSocket auth, ...

• rajeshgoli
·
• Opened 
  38 minutes ago
·
• #849

JSungMin/vs-token-safer

v0.14.0 — unattended self-improvement loop (discover-driven hardening)

Two self-improvement rounds, both selected by vts discover s own bypass data (Grep tool = 89% of misses; top missed shapes = quoted alternations / anchors): - Boot auto-learn (VTS_AUTO_LEARN): the server ...

• JSungMin
·
• Opened 
  38 minutes ago
·
• #21

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