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PeterPonyu/niche-lens-st

[figure] Niche-composition cell-type enrichment heatmap per prototype

Motivation A niche/microenvironment representation is only interpretable if each learned prototype maps to a recognizable cellular composition. Benchmarks of spatial-domain methods consistently report ...

• PeterPonyu
·
• Opened 
  4 seconds ago
·
• #292

heobrune/augment-rm-doc-checker

Bug report

bug

• heobrune
·
• Opened 
  6 seconds ago
·
• #5

PeterPonyu/niche-lens-st

[figure] Cell-cell communication robustness to ligand-receptor database choice and spatial-proximity validation

Motivation When a method reports cell-cell communication (CCC) / ligand-receptor (L-R) interaction scores, two validations are now expected by the community. First, robustness to the choice of L-R reference ...

• PeterPonyu
·
• Opened 
  7 seconds ago
·
• #291

heobrune/augment-rm-doc-checker

Refactor proposal

refactor

• heobrune
·
• Opened 
  7 seconds ago
·
• #4

heobrune/augment-rm-doc-checker

Missing validation for readiness probe

bug

• heobrune
·
• Opened 
  7 seconds ago
·
• #3

heobrune/augment-rm-doc-checker

Improve onboarding docs

documentation

• heobrune
·
• Opened 
  8 seconds ago
·
• #2

loremadora/augment-rm-session-store-lib

Improve onboarding docs

documentation

• loremadora
·
• Opened 
  11 seconds ago
·
• #3

loremadora/augment-rm-session-store-lib

Bug report

bug

• loremadora
·
• Opened 
  11 seconds ago
·
• #4

loremadora/augment-rm-session-store-lib

Feature request

feature

• loremadora
·
• Opened 
  12 seconds ago
·
• #2

PeterPonyu/niche-lens-st

[figure] Cross-section annotation-transfer accuracy (KNN/MLP) with embedding-vs-PCA control and transfer matrix

Motivation Label/annotation transfer across sections, samples, or platforms is a standard downstream evaluation for spatial representation methods, and it tests something the raw clustering metrics do ...

• PeterPonyu
·
• Opened 
  13 seconds ago
·
• #290

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Learn how you can use GitHub Issues to plan and track your work.

Save views for sprints, backlogs, teams, or releases. Rank, sort, and filter issues to suit the occasion. The possibilities are endless.Learn more about GitHub Issues

ProTip! Restrict your search to the title by using the in:title qualifier.