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Refactor job submission #189

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@CodyCBakerPhD
  1. Do not write a 'last_submitted.json` file to the queue; purge all code related to that
  2. Instead, simplify by creating a .submitted file adjacent to each sbatch script
  3. In order to qualify for job submission, a job must
    3a. be within the subset of the state.jsonl entries that do not have logs or output
    3b. must NOT have a .submitted file adjacent to the sbatch script

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