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I posted a github ticket number 2441700 and they had the following reply:

"
The error message you've encountered is due to GitHub's use of an 80-bit TOTP secret which is used to ensure compatibility with older versions of Google Authenticator. FreeOTP warns about the usage of any secret that is shorter than 128-bits and is why you've encountered that error.

GitHub believes an 80-bit key to still be sufficient for account security, and at this time we have no plans to change this, and recommend ignoring this message if you elect to use FreeOTP for 2FA.
"

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@samus-aran
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@JuriJuriJuri
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@Matthias-Hermsdorf
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