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feat(pipeline): write chunkHashes into manifest.json #68

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@nigel-hall-codes

Extend WriteManifest to include a chunkHashes object in the JSON output. The map is built during the chunk loop (both skipped and regenerated chunks write their fingerprint into newHashes).\n\nSee design: sdlc/#60/design.md — Q2 section.\n\nDiscovered from #60.

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